In the original Normalyzer another format was used. The first row contains sample groups (zero for annotation columns), the second row contains sample names and then the data starts. 

                0    0    1    1    1    2    2    2
                pep  RT   s1_1 s1_2 s1_3 s2_1 s2_2 s2_3
                ATCA 40.3 20.1 20.2 19.5 22.3 22.5 21.9
                GCC  43.0 20.3 19.8 19.5 21.7 21.9 21.2
If you have a matrix in this format you can convert it into a data matrix and a design matrix by using the service below.
Legacy data matrix (max size: 50 MB) [?]